Definitely rout your MAF and filter to the inner fender. The blower and engine are producing enough heat.....no sense sucking it in from a hot source to boot.
Remind me again....what are you using for MAF injectors?
From the research I've done, it seems 24lb/hr injectors are about as big as you can go without starting to see issues with idle and low speed drivability. I'm running 30's in my N/A set up and even I am having issues. Thought for the longest time that the injectors were causing my car to run rich, but when I installed my wide band, I noticed the opposite to be true. Cruise and WOT is just fine, but idle is right off the board lean (above 20:1) and light cruise is in the 17.5:1 range. Just picked up a Moates Quarterhorse to tune with. When things get settled with my move, I'm gonna tinker with it and see just how powerful a tuning advice.
The Megasquirt is nice....but pricey. The one nice thing about using it, is that you're able to do away with the MAF meter altogether if you'd like.....which can really remove a tuning obstacle.