Fox Body 5-Speed to Auto Swap

I did the opposite of what your doing. All you should need to make it work would be the:
Transmission
Computer-
Pedals(steering column has to come down) unless you just take the clutch pedal out
Torque Converter, nuts for the TC
Flexplate with I believe the 164 tooth plate.

You will also need the cable for the kick down and the shifter box. In place of that you can use a B&M shifter is what I hear. My cross-member from the automatic worked fine on my 5-speed. I'm sure that others have something to add, but I think that about covers it. you can find all of that stuff off a junk car granted its whole.

I had to make up something for the reverse lights because the automatic system on mine had the reverse lights and Park/Neutral switch together.

if you want to do it correctly you will need the wire harness for the aod transmission. if not, and if your wire friendly you can make your own harness. but you dont use the connector that way. and you will need to make sure that you use the correct wires or the magical smoke will come out. I think the aod trans has a 4 wire connector on the drivers side of the trans. your better off to just get a harness and wire it in. When i put my five speed in i just pinched the neutral start together and found a connector to wire my reverse lights. I tried using the switch out of my aod but the 5 speed had a different connector.