Just keep in mind that the stock intake will choke any gains that may be had from the GT40P upgrade if you are expecting any horsepower increase. The stock intake lower is the problem area but it can be ported to increase the flow enough to see some gains from the heads. The stock intake flows about 130cfm, the stock E7 heads flow about 160cfm....if you are looking for a H.P. bump, then I would just upgrade your intake to a GT40 intake and pick up the 30 cfm increase. Intake swaps are easy, cheaper, and should be done before the heads anyway in my opinion.
If you are trying to look factory then have the lower intake ported, TMOSS provides a port service for the stock lowers.