Ok.... this whole thread has become very convoluted and once again, it's very difficult to diagnose your specific problem without having been there to see the installation and without being able to personally examine your pieces and parts first hand.
That said, I recommend the following:
Remove your components. Heads and intake.
Have the head condition inspected by a reputable machine shop.
If they check out, reinstall them with a FRESH set of Felpro gaskets and follow the proper torque sequence.
USE NEW HEAD BOLTS! USE A TORQUE WRENCH! USE THREAD SEALER ON THE LONG BOLTS AND THREAD LOCK (RED) ON THE SHORT ONES. Torque to Yield.
Install a NEW lower intake gasket (I like the ones from FMS with the blue ridge on one side). Use Permatex gasket maker around ALL the ports (intake, exhaust, water).
Be sure to seal the small slits between the bottom of the head surface and the block deck. There's usually a small space that you can fit a piece of paper into between the head and the block (in the area where the rear gasket intake gasket sits). Make sure that gets sealant.
Whether you use the front and rear seals is up to you but the end MUST be sealed with the gasket maker regarless. If you use cork gaskets then coat each side with the gasket maker. ALLOW THE SEALANT TO GET TACKY BEFORE INSTALLATION OF THE LOWER INTAKE. Other wise you'll likely just squish out all the sealant while you perform the torque sequence.
USE THE CORRECT TORQUE SEQUENCE ON THE LOWER INTAKE. Allow it to dry for a few hours (4 or 5 at 70* or better) then start the motor and let it get warmed all the way through (dont give it any gas, just let it idle). Shut it down, let it cool then retorque the lower intake following the same torque sequence (yes there are some things you may have to remove for the retorque).
Once all back together then drive it. Be nice to it for a heat cycle or two.
Have I forgotten anything guys?