If you go to the 5.0 tech/how to thread in the tech forum you will see a bunch of info, in there look for head, cam, intake install. You may have to sift through some stuff to get to the part about the upper removal.
This would be a good time to invest in a quality repair manual, I have what I call a 'magic book' it's a ford assembly manual, I think I got it from motor books, do a google search. Get one that is specific to your year.
https://www.ebay.com/sch/i.html?_nkw=1989+mustang+shop+manual
I'm an idiot, I actually found it in the haynes, they don't have the torque specs listed, but I was able to track those down. Thanks for the input on the 'magic book' I was actually looking at one of those exact ones on eBay last night. I'll have to pick it up. Now to go get this intake off and get the new wiring in. I'm hoping to have all of these problems fixed with the new harness, but murphy's law says that it's still going to run like