For a point of reference I would do the whole top dead center drill and make sure the cam timing is right. being off a tooth will make it run poorly but should not cost that much compression. A couple of teeth maybe. Definitely at least check the alignment of the cam timing marks. Look up degreeing the camshaft. Also karthief may be correct if your push rods are too long they may not be letting the valves fully close. Did you change lifters to lifters, cams and push rods have to match, they don't always play well if you mix manufactures. Also I would check the valve lash adjustment if the rockers are too tight the valves won't close all the way either. Could also be a combination of the events.
Also double check that your compression gauge is good, it would suck to pull things back apart to find out later you had a mis-calibrated/broken gauge. The rough idle and misfire could be caused by other issues.
I just googled lost compression after cam install, there is a lot of information about making sure cam timing is correct and appenrenty a common mistake of using the wrong marks with multi keyway timing chain gears when lining up timing, also common to set it out by 180 degrees.
Keep us posted on your progress.