When I referred to the NSS I was talking about the 'neutral safety switch' which is actually not accurate, the 'clutch safety switch ' would be more accurate, the NSS on top of the trans is a neutral sensing switch that just talks to the computer for idle 'strategy ', neither one has nothing to do with the ignition.
this is taken from the 'cranks but no start checklist' credit Jrichker.
C.) TFI module: use a test light to check the TFI module. Place one lead of the test light on the red/green wire on the ignition coil connector and the other lead on the dark green/yellow wire on the ignition coil connector. If the TFI is working properly, the test light will flash when the engine is cranked using the ignition switch.
Do this test, post results..