I think wsbrigham maybe referring to the lower intake (between blower and heads) which I have also heard was the most restrictive part of the Series I through V systems due to its poor design. Add to that, the fact that there are gaps between the intercooler and lower intake walls. This reduces the efficiency of the intercooler.
Saleen made improvements to the inlet tube on the Series IV and V that provides a more direct air path and is sized nicely to accept a 75mm throttle body.
To maximize the efficiency of the Series I/II systems, some people have ported the blower case, sealed the intercooler gaps and installed the later Series IV inlet and added a larger throttle body. It can be a lot of work and $$.