NEED HELP! Hesitation problem!

Last weekend, I replaced my exhaust, headers to tailpipes, well after the install I noticed a hesitation that only happens under load. The car idles just fine but when I drive it and give it gas it misses and hesitates as the rpm's climb.

I replaced the cap/rotor, plugs, wires, and will replace the fuel pressure regulator tomorrow. I cant understand why its misses and hesitating. The last few weeks before I did the exhaust I felt a few times when the engine misses and hesitates under load but now its much much worse, maybe the new exhaust made the problem bigger. Any ideas would be greatly appricated! Could be a bad distributor or coil?? Help!!!
 
Dump the codes and see what the computer says is wrong…Codes may be present in the computer even if the Check Engine light isn’t on.

Here's the link to dump the computer codes with only a jumper wire or paper clip and the check engine light, or test light or voltmeter. I’ve used it for years, and it works great. You watch the flashing test lamp or Check Engine Light and count the flashes.

See Troublcodes.net Trouble Codes OBD & OBD2 Trouble Codes and Technical info & Tool Store. By BAT Auto Technical

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If your car is an 86-88 stang, you'll have to use the test lamp or voltmeter method. There is no functional check engine light on the 86-88's except possibly the Cali Mass Air cars.

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The STI has a gray connector shell and a white/red wire. It comes from the same bundle of wires as the self test connector.

89 through 95 cars have a working Check Engine light. Watch it instead of using a test lamp.

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The STI has a gray connector shell and a white/red wire. It comes from the same bundle of wires as the self test connector.

There is a single dark brown connector with a black/orange wire. It is the 12 volt power to the under the hood light. Do not jumper it to the computer test connector. If you do, you will damage the computer.

What to expect:
You should get a code 11 (two single flashes in succession). This says that the computer's internal workings are OK, and that the wiring to put the computer into diagnostic mode is good. No code 11 and you have some wiring problems.

Codes have different answers if the engine is running from the answers that it has when the engine isn't running. It helps a lot to know if you had the engine running when you ran the test.

Trouble codes are either 2 digit or 3 digit, there are no cars that use both 2 digit codes and 3 digit codes.

Alternate methods:
For those who are intimidated by all the wires & connections, see Actron® for what a typical hand scanner looks like. Normal retail price is about $30 or so at AutoZone or Wal-Mart.

Or for a nicer scanner see EQUUS DIGITAL FORD CODE READER (3145) – It has a 3 digit LCD display so that you don’t have to count flashes or beeps.. Cost is $30.