Much appreciated my friend i will strongly consider the PI swap and a blower kit, would it be easier to just swap the PI heads or would i be better off just swapping the entire engine? Sorry for the endless questions, I'm realizing I didnt know as much as I thought I did lolElectrically the 1999-2004 is a very different car than the 2005+ model year. Unless you are trying to re-engineer the whole car (electrically) the way to do a 3V swap is to retain the ORIGINAL wiring harness and PCM. What most people do is to use the 3V cam phases lock outs to "fix/lock" the cam timing. The 2V PCM will run a 3V motor with a tune.
Expect some issues with the fuel rails, fuel pressure sensor, intake, exhaust manifolds, drive shaft (length). The swap has been done and there are kits out there to help.
BUT........This still leaves the problem of passing inspection. The 3V motor does not have an external EGR system. Where as the 2V does. The problem just begin with the lack of an EGR port on the 3V exhaust manifolds. Of course it's possible to disable EGR in the tune but this will stop the readiness monitors from becoming "ready".
If you are dead set on swapping in a motor from a different car consider a Romeo PI from a 2001+ Grand Marquis, Crown Vic or Town Car. The swap is straight forward and will give the HP bump that the PI heads provide (with a tune). The PI 4.6's are readily available in the salvage yards for very good $$. Best of all the car will pass any inspection after done.